PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011072952.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Dof

Protein Properties

Length: 299aa MW: 32125.2 Da PI: 6.3929

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011072952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.1	1.9e-38	32	91	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ lkcprCds ntkfCyynny+lsqPr+fCk+CrryWt+GG lrnvPvGgg+rk k+s+ XP_011072952.1 32 HQPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTRGGVLRNVPVGGGCRKTKRSK 91 6789****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-29	28	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.2E-33	33	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.627	35	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MQDMHAVGGG GGGGRFLGGG DRRLRPHNHP THQPLKCPRC DSLNTKFCYY NNYNLSQPRH 60 FCKSCRRYWT RGGVLRNVPV GGGCRKTKRS KQKSSAASPG DASREMSLSS VQSSSSESSS 120 LTAAATATTT TATPTSAVPD EGSAPSNTSL SSAVAFDFPD GRFFSVMNRL ATDRNINHQP 180 LANHPSTDGQ IFQAEISSFT RLMTSSEEMM GFGMGEASTT SYGREQQANQ APTAKNPDPG 240 TAAVDEFKMQ DVSDEGLAAA LEWGSGGDEE LFDLTAGVDP AYWSQPQWTD NDQSINYLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	12	19	GGRFLGGG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072952.1	0.0	PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBL	A0A022Q6Q4	3e-86	A0A022Q6Q4_ERYGU; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	9e-51	OBF binding protein 4